Training Service Catalogue

Regular Training Offerings

WorkshopEssential SkillsSubmit Interest  Next Session 

Introduction to NeSI

https://youtube.com/playlist?list=PLvbRzoDQPkuFsIzAWaIiYgs-kConq-Hjw&si=... 

NoneSubmit InterestAvailable on request

Introduction to High Performance Computing on NeSI

https://nesi.github.io/hpc-intro/

Running Deep Learning on NeSI

https://github.com/nesi/dl_demos

Bash, Slurm/NeSISubmit InterestTBC

Machine Learning 101

https://github.com/nesi/sklearn_tutorial

Bash, PythonSubmit InterestTBC

Machine Learning 102

https://github.com/nesi/ml102_workshop

Bash, Python, Slurm/NeSISubmit InterestTBC

Introduction to R

https://genomicsaotearoa.github.io/Introduction-to-R/

RSubmit InterestTBC

RNA Sequencing

https://genomicsaotearoa.github.io/RNA-seq-workshop/ 

Bash, RSubmit InterestTBC

Bash for Bioinformatics

https://genomicsaotearoa.github.io/shell-for-bioinformatics/

BashSubmit InterestTBC

Intermediate Shell

https://genomicsaotearoa.github.io/shell-for-bioinformatics/ 

BashSubmit InterestTBC

Genomics Data Carpentry

https://datacarpentry.org/genomics-workshop/ 

Bash, RSubmit InterestTBC

Introduction to Command Line

https://swcarpentry.github.io/shell-novice/

Introduction to Nextflow

https://genomicsaotearoa.github.io/introduction-to-nextflow/

Introduction to Bash Scripting and HPC Scheduler

https://genomicsaotearoa.github.io/Workshop-Bash_Scripting_And_HPC_Job_S...

    --Submit InterestTBC

 

Other (more specific) training offerings *

WorkshopEssential SkillsSubmit Request

Python for Ecologists

https://datacarpentry.org/python-ecology-lesson/

PythonSubmit Request

Genotype Imputation

https://genomicsaotearoa.github.io/Imputation-workshop/

Bash, R, Slurm/NeSISubmit Request

Long-Read Assembly

https://genomicsaotearoa.github.io/long-read-assembly/

Bash, Slurm/NeSISubmit Request

Pangenome Graphs

https://genomicsaotearoa.github.io/Pangenome-Graphs-Workshop/

Bash, Slurm/NeSISubmit Request

Outlier Analysis

https://genomicsaotearoa.github.io/Outlier_Analysis_Workshop/

Bash, RSubmit Request

Single Cell RNA-seq

https://genomicsaotearoa.github.io/scRNA-seq-data-analysis/

Bash, RSubmit Request

Python for Atmosphere and Ocean Scientists

https://carpentries-lab.github.io/python-aos-lesson/

PythonSubmit Request

Introduction to Snakemake

https://nesi.github.io/snakemake_workshop/

Bash, Slurm/NeSISubmit Request

Introduction to Containers on NeSI

https://nesi.github.io/ernz20-containers/

Bash, Slurm/NeSISubmit Request

Intermediate R

https://genomicsaotearoa.github.io/Intermediate-R/

RSubmit Request

*We encourage you to submit a request for any workshops included in our specific offerings and beyond by emailing us. However, please note that our ability to accommodate your request may depend on our team's workload and availability. In case of any queries, reach out to us at training@nesi.org.nz 

You can find more information on bioinformatics workshops we offer through our partnership with Genomics Aotearoa here

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