Training Service Catalogue

Regular Training Offerings

WorkshopEssential SkillsSubmit Interest  Next Session 

Introduction to NeSI

https://youtube.com/playlist?list=PLvbRzoDQPkuFsIzAWaIiYgs-kConq-Hjw&si=...

NoneSubmit InterestAvailable on request

Introduction to High Performance Computing on NeSI

https://nesi.github.io/hpc-intro/

Bash, Slurm/NeSISubmit InterestMarch 2024

Machine Learning 101

https://github.com/nesi/sklearn_tutorial

Bash, PythonSubmit InterestMarch 2024

Machine Learning 102

https://github.com/nesi/ml102_workshop 

Bash, Python, Slurm/NeSISubmit InterestApril 2024

Introduction to R

https://genomicsaotearoa.github.io/Introduction-to-R/

RSubmit Interest28 Feb 2024

RNA Sequencing

https://genomicsaotearoa.github.io/RNA-seq-workshop/ 

Bash, RSubmit InterestQ1 2024

Bash for Bioinformatics

https://genomicsaotearoa.github.io/shell-for-bioinformatics/

BashSubmit Interest14 Feb 2024

Intermediate Shell

https://genomicsaotearoa.github.io/shell-for-bioinformatics/ 

BashSubmit InterestQ1 2024

Genomics Data Carpentry

https://datacarpentry.org/genomics-workshop/ 

Bash, RSubmit InterestQ1 2024

Introduction to Command Line

https://swcarpentry.github.io/shell-novice/

    --Submit InterestQ1 2024

 

Other (more specific) training offerings *

WorkshopEssential SkillsSubmit Request

Python for Ecologists

https://datacarpentry.org/python-ecology-lesson/

PythonSubmit Request

Genotype Imputation

https://genomicsaotearoa.github.io/Imputation-workshop/

Bash, R, Slurm/NeSISubmit Request

Long-Read Assembly

https://genomicsaotearoa.github.io/long-read-assembly/

Bash, Slurm/NeSISubmit Request

Pangenome Graphs

https://genomicsaotearoa.github.io/Pangenome-Graphs-Workshop/

Bash, Slurm/NeSISubmit Request

Outlier Analysis

https://genomicsaotearoa.github.io/Outlier_Analysis_Workshop/

Bash, RSubmit Request

Single Cell RNA-seq

https://genomicsaotearoa.github.io/scRNA-seq-data-analysis/

Bash, RSubmit Request

Python for Atmosphere and Ocean Scientists

https://carpentries-lab.github.io/python-aos-lesson/

PythonSubmit Request

Introduction to Snakemake

https://nesi.github.io/snakemake_workshop/

Bash, Slurm/NeSISubmit Request

Introduction to Containers on NeSI

https://nesi.github.io/ernz20-containers/

Bash, Slurm/NeSISubmit Request

Intermediate R

https://genomicsaotearoa.github.io/Intermediate-R/

RSubmit Request

 

*We encourage you to submit a request for any workshops included in our specific offerings and beyond by emailing us. However, please note that our ability to accommodate your request may depend on our team's workload and availability. In case of any queries, reach out to us at training@nesi.org.nz 

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