Research outputs

For information on how to acknowledge NeSI in research outputs, please visit our Acknowledgement and Publication page.

The following research output were supported by NeSI infrastructure or expertise. 
(updated 19 Sept 2023)


Kolisnik, T., Sulit, A.K., Schmeier, S., Frizelle, F., Purcell, R., Smith, A., Silander, O. Identifying important microbial and genomic biomarkers for differentiating right- versus left-sided colorectal cancer using random forest models (2023) BMC Cancer, 23 (1), art. no. 647. 
DOI: 10.1186/s12885-023-10848-9

 

Charlesworth, E., Plöger, F., Birner, T., Baikhadzhaev, R., Abalos, M., Abraham, N.L., Akiyoshi, H., Bekki, S., Dennison, F., Jöckel, P., Keeble, J., Kinnison, D., Morgenstern, O., Plummer, D., Rozanov, E., Strode, S., Zeng, G., Egorova, T., Riese, M. Stratospheric water vapor affecting atmospheric circulation (2023) Nature Communications, 14 (1), art. no. 3925, . 
DOI: 10.1038/s41467-023-39559-2

 

Chaput, R., Quigley, C.N., Weppe, S.B., Jeffs, A.G., de Souza, J.M.A.C., Gardner, J.P.A. Identifying the source populations supplying a vital economic marine species for the New Zealand aquaculture industry (2023) Scientific Reports, 13 (1), art. no. 9344, . 

DOI: 10.1038/s41598-023-36224-y

 

Chen, S., Li, Z., Liu, L., Wen, Y. The systematic comparison between Gaussian mirror and Model-X knockoff models (2023) Scientific Reports, 13 (1), art. no. 5478, . 
DOI: 10.1038/s41598-023-32605-5

 

Grymak, A., Tieh, M.T., Yang, A.H.X., Choi, J.J.E. Development of predictive algorithms for the wear resistance of denture teeth materials (2023) Journal of the Mechanical Behavior of Biomedical Materials, 144, art. no. 105984. 
DOI: 10.1016/j.jmbbm.2023.105984

 

Richards, S.M., Eldridge, J.J., Briel, M.M., Stevance, H.F., Willcox, R. New constraints on the Bray conservation-of-momentum natal kick model from multiple distinct observations (2023) Monthly Notices of the Royal Astronomical Society, 522 (3), pp. 3972-3985. 
DOI: 10.1093/mnras/stad977

 

Lv, L., Lu, R., Zhu, J., Yu, R., Zhang, W., Cui, E., Chen, X., Dai, Y., Cui, L., Li, J., Zhou, L., Chen, W., Wang, Z., Mai, L. Coordinating the Edge Defects of Bismuth with Sulfur for Enhanced CO2 Electroreduction to Formate (2023) Angewandte Chemie - International Edition, 62 (25), art. no. e202303117, . 
DOI: 10.1002/anie.202303117

 

McIntyre, S.M., Ennis, C., Garden, A.L. A Computational Investigation into the Hydrogenation of NO on Water Ice Surfaces to Rationalize the NO:HNO:NOH Disparity in Space (2023) ACS Earth and Space Chemistry, 7 (6), pp. 1195-1206. 
DOI: 10.1021/acsearthspacechem.2c00391

 

Frauendiener, J., Stevens, C. The non-linear perturbation of a black hole by gravitational waves. II. Quasinormal modes and the compactification problem (2023) Classical and Quantum Gravity, 40 (12), art. no. 125006. 
DOI: 10.1088/1361-6382/acd4b1

 

Malyarenko, A., Gossart, A., Sun, R., Krapp, M. Conservation of heat and mass in P-SKRIPS version 1: The coupled atmosphere-ice-ocean model of the Ross Sea (2023) Geoscientific Model Development, 16 (11), pp. 3355-3373. 
DOI: 10.5194/gmd-16-3355-2023

 

Perez-Silva, A., Kaneko, Y., Savage, M., Wallace, L., Warren-Smith, E. Characteristics of Slow Slip Events Explained by Rate-Strengthening Faults Subject to Periodic Pore Fluid Pressure Changes (2023) Journal of Geophysical Research: Solid Earth, 128 (6), art. no. e2022JB026332.
DOI: 10.1029/2022JB026332

 

Nicholson, G.M., Clements, K.D. Micro-photoautotroph predation as a driver for trophic niche specialization in 12 syntopic Indo-Pacific parrotfish species (2023) Biological Journal of the Linnean Society, 139 (2), pp. 91-114. 
DOI: 10.1093/biolinnean/blad005

 

Vaux, F., Fraser, C.I., Craw, D., Read, S., Waters, J.M. Integrating kelp genomic analyses and geological data to reveal ancient earthquake impacts (2023) Journal of the Royal Society Interface, 20 (202), art. no. 20230105, . 
DOI: 10.1098/rsif.2023.0105

 

Rickard, G.J., Behrens, E., Chiswell, S., Law, C.S., Pinkerton, M.H. Biogeochemical and Physical Assessment of CMIP5 and CMIP6 Ocean Components for the Southwest Pacific Ocean (2023) Journal of Geophysical Research: Biogeosciences, 128 (5), art. no. e2022JG007123, . 
DOI: 10.1029/2022JG007123

 

Remoto, P.I.I.I.J.G., Bērziņš, K., Fraser-Miller, S.J., Korter, T.M., Rades, T., Rantanen, J., Gordon, K.C. Exploring the Solid-State Landscape of Carbamazepine during Dehydration: A Low Frequency Raman Spectroscopy Perspective (2023) Pharmaceutics, 15 (5), art. no. 1526. 
DOI: 10.3390/pharmaceutics15051526

 

Poudel, P., Masters, S.L. Structural, thermochemical and kinetic insights on the pyrolysis of diketene to produce ketene (2023) Journal of Molecular Modeling, 29 (5), art. no. 168, . 
DOI: 10.1007/s00894-023-05572-x

 

Ohwofasa, A., Dhami, M., Tian, B., Winefield, C., On, S.L.W. Environmental influences on microbial community development during organic pinot noir wine production in outdoor and indoor fermentation conditions (2023) Heliyon, 9 (5), art. no. e15658, . 
DOI: 10.1016/j.heliyon.2023.e15658

 

Elsaid, K., Merriman, T.R., Rossitto, L.-A., Liu-Bryan, R., Karsh, J., Phipps-Green, A., Jay, G.D., Elsayed, S., Qadri, M., Miner, M., Cadzow, M., Dambruoso, T.J., Schmidt, T.A., Dalbeth, N., Chhana, A., Höglund, J., Ghassemian, M., Campeau, A., Maltez, N., Karlsson, N.G., Gonzalez, D.J., Terkeltaub, R. Amplification of Inflammation by Lubricin Deficiency Implicated in Incident, Erosive Gout Independent of Hyperuricemia (2023) Arthritis and Rheumatology, 75 (5), pp. 794-805. 
DOI: 10.1002/art.42413

 

He, J.C.W., Clifton, G.C., Ramhormozian, S., Hogan, L.S. Numerical and analytical study of pinned column base plate connections (2023) Journal of Constructional Steel Research, 204, art. no. 107846, . 
DOI: 10.1016/j.jcsr.2023.107846

 

Shahzadi, A., Wang, T., Bebbington, M., Parry, M. Inhomogeneous hidden semi-Markov models for incompletely observed point processes (2023) Annals of the Institute of Statistical Mathematics, 75 (2), pp. 253-280. 
DOI: 10.1007/s10463-022-00843-5

 

Rani, B., Bubanja, V., Jindal, V.K. Density functional theory study of the enhancement of quantum capacitance of graphene by phosphorous doping (2023) International Journal of Quantum Chemistry, 123 (6), art. no. e27052, . 
DOI: 10.1002/qua.27052

 

Larrouy, J.L., Dhami, M.K., Jones, E.E., Ridgway, H.J. Physiological stage drives fungal community dynamics and diversity in Leptospermum scoparium (mānuka) flowers (2023) Environmental Microbiology, 25 (3), pp. 766-771. 
DOI: 10.1111/1462-2920.16324

 

van der Reis, A.L., Beckley, L.E., Olivar, M.P., Jeffs, A.G. Nanopore short-read sequencing: A quick, cost-effective and accurate method for DNA metabarcoding (2023) Environmental DNA, 5 (2), pp. 282-296. 
DOI: 10.1002/edn3.374

 

Li, Z., Dang, W., Hao, T., Zhang, H., Yao, Z., Zhou, W., Deng, L., Yu, H., Wen, Y., Liu, L. Shared genetics and causal relationships between major depressive disorder and COVID-19 related traits: a large-scale genome-wide cross-trait meta-analysis (2023) Frontiers in Psychiatry, 14, art. no. 1144697. 
DOI: 10.3389/fpsyt.2023.1144697

 

Bailey, S., Guhlin, J., Senanayake, D.S., Scherer, P., Brekke, P., Ewen, J.G., Santure, A.W., Whibley, A. Assembly of female and male hihi genomes (stitchbird; Notiomystis cincta) enables characterization of the W chromosome and resources for conservation genomics (2023) Molecular Ecology Resources. 
DOI: 10.1111/1755-0998.13823

 

Huang, X., Lu, R., Cen, Y., Wang, D., Jin, S., Chen, W., Geoffrey, I., Waterhouse, N., Wang, Z., Tian, S., Sun, X. Micropore-confined Ru nanoclusters catalyst for efficient pH-universal hydrogen evolution reaction (2023) Nano Research. 
DOI: 10.1007/s12274-023-5711-1

 

West, A.G., Digby, A., Santure, A.W., Guhlin, J.G., Dearden, P., Taylor, M.W., Urban, L., Kakapo Recovery Team Capturing species-wide diversity of the gut microbiota and its relationship with genomic variation in the critically endangered kākāpō (2023) Molecular Ecology, . 
DOI: 10.1111/mec.16999

 

Miller, A.K., Brosnahan, C.L., Pande, A., Baker, C.F., Geoghegan, J.L., Kitson, J., Gemmell, N.J., Dowle, E.J. Formalin-fixed paraffin-embedded (FFPE) samples help to investigate transcriptomic responses in wildlife disease (2023) Molecular Ecology Resources, . 
DOI: 10.1111/1755-0998.13805

 

Kurniadi, A., Weller, E., Kim, Y.-H., Min, S.-K. Evaluation of Coupled Model Intercomparison Project Phase 6 model-simulated extreme precipitation over Indonesia (2023) International Journal of Climatology, 43 (1), pp. 174-196. 
DOI: 10.1002/joc.7744

 

Grosser, S., Dutoit, L., Foster, Y., Robertson, F., Fidler, A.E., Martini, D., Knapp, M., Robertson, B.C. Genomic evidence of a functional RH2 opsin in New Zealand parrots and implications for pest control (2023) New Zealand Journal of Zoology, 50 (2), pp. 341-349. 
DOI: 10.1080/03014223.2022.2053554

 

The following research output were supported by NeSI infrastructure or expertise. 
(updated 20 June 2023)


Irvine, W., Tyler, M., Delgoda, R. In silico characterization of the psilocybin biosynthesis pathway (2023) Computational Biology and Chemistry, 104, art. no. 107854. 
DOI: 10.1016/j.compbiolchem.2023.107854
 

Scarsbrook, L., Verry, A.J.F., Walton, K., Hitchmough, R.A., Rawlence, N.J. Ancient mitochondrial genomes recovered from small vertebrate bones through minimally destructive DNA extraction: Phylogeography of the New Zealand gecko genus Hoplodactylus (2023) Molecular Ecology, 32 (11), pp. 2964-2984. 
DOI: 10.1111/mec.16434

 

Lambie, S., Steenbergen, K.G., Gaston, N. Dynamic Activation of Ga Sites by Pt Dopant in Low-Temperature Liquid-Metal Catalysts (2023) Angewandte Chemie - International Edition, 62 (19), art. no. e202219009. 
DOI: 10.1002/anie.202219009

 

Poquérusse, J., Nolan, M., Thorburn, D.R., Van Hove, J.L.K., Friederich, M.W., Love, D.R., Taylor, J., Powell, C.A., Minczuk, M., Snell, R.G., Lehnert, K., Glamuzina, E., Jacobsen, J.C. Severe neonatal onset neuroregression with paroxysmal dystonia and apnoea: Expanding the phenotypic and genotypic spectrum of CARS2-related mitochondrial disease (2023) JIMD Reports, 64 (3), pp. 223-232. 
DOI: 10.1002/jmd2.12360

 

Jayaraman, J., Yoon, M., Hemara, L.M., Bohne, D., Tahir, J., Chen, R.K.Y., Brendolise, C., Rikkerink, E.H.A., Templeton, M.D. Contrasting effector profiles between bacterial colonisers of kiwifruit reveal redundant roles converging on PTI-suppression and RIN4 (2023) New Phytologist, 238 (4), pp. 1605-1619. 
DOI: 10.1111/nph.18848

 

van Galen, L.G., Orlovich, D.A., Lord, J.M., Nilsen, A.R., Dutoit, L., Larcombe, M.J. Correlated evolution in an ectomycorrhizal host–symbiont system (2023) New Phytologist, 238 (3), pp. 1215-1229. 
DOI: 10.1111/nph.18802

 

Chen, J., Lane, J.R., Kjaergaard, H.G. Reaction of Atmospherically Relevant Sulfur-Centered Radicals with RO2 and HO2 (2023) Journal of Physical Chemistry A, 127 (13), pp. 2986-2991. 
DOI: 10.1021/acs.jpca.3c00558

 

Briel, M.M., Stevance, H.F., Eldridge, J.J. Understanding the high-mass binary black hole population from stable mass transfer and super-Eddington accretion in BPASS (2023) Monthly Notices of the Royal Astronomical Society, 520 (4), pp. 5724-5745. 
DOI: 10.1093/mnras/stad399

 

Novis, P.M., Dhami, M., Podolyan, A., Matsumoto, M., Kodner, R. The austral biflagellate Chloromonas rubroleosa (Chlorophyceae) is the closest relative of the unusual quadriflagellate genus Chlainomonas, both found in snow (2023) Journal of Phycology, 59 (2), pp. 342-355. 
DOI: 10.1111/jpy.13318

 

Duntsch, L., Whibley, A., de Villemereuil, P., Brekke, P., Bailey, S., Ewen, J.G., Santure, A.W. Genomic signatures of inbreeding depression for a threatened Aotearoa New Zealand passerine (2023) Molecular Ecology, 32 (8), pp. 1893-1907. 
DOI: 10.1111/mec.16855

 

van Galen, L.G., Orlovich, D.A., Lord, J.M., Bohorquez, J., Nilsen, A.R., Summerfield, T.C., Larcombe, M.J. Zeta diversity differentiates factors driving community assembly of rare and common ectomycorrhizal fungi (2023) Molecular Ecology, 32 (8), pp. 2092-2109. 
DOI: 10.1111/mec.16860

 

Pavani, M., Chiroli, E., Cancrini, C., Gross, F., Bonaiuti, P., Villa, S., Giavazzi, F., Matafora, V., Bachi, A., Fava, L.L., Lischetti, T., Ciliberto, A. Triap1 upregulation promotes escape from mitotic-slippage-induced G1 arrest (2023) Cell Reports, 42 (3), art. no. 112215. 
DOI: 10.1016/j.celrep.2023.112215

 

Zhang, Z., Chen, S., Zhu, J., Ye, C., Mao, Y., Wang, B., Zhou, G., Mai, L., Wang, Z., Liu, X., Wang, D. Charge-Separated Pdδ−-Cuδ+ Atom Pairs Promote CO2 Reduction to C2 (2023) Nano Letters, 23 (6), pp. 2312-2320. 
DOI: 10.1021/acs.nanolett.2c05112

 

Francis, T.A., Maynard-Casely, H.E., Cable, M.L., Hodyss, R., Ennis, C. Simulation of Cocrystal Formation in Planetary Atmospheres: The C6H6:C2H2 Cocrystal Produced by Gas Deposition (2023) Journal of Physical Chemistry A, 127 (10), pp. 2322-2335. 
DOI: 10.1021/acs.jpca.2c08791

 

Luo, M., Ozden, A., Wang, Z., Li, F., Erick Huang, J., Hung, S.-F., Wang, Y., Li, J., Nam, D.-H., Li, Y.C., Xu, Y., Lu, R., Zhang, S., Lum, Y., Ren, Y., Fan, L., Wang, F., Li, H.-H., Appadoo, D., Dinh, C.-T., Liu, Y., Chen, B., Wicks, J., Chen, H., Sinton, D., Sargent, E.H. Coordination Polymer Electrocatalysts Enable Efficient CO-to-Acetate Conversion (2023) Advanced Materials, 35 (10), art. no. 2209567. 
DOI: 10.1002/adma.202209567

 

Hayward, M.W., Lane, E.M., Whittaker, C.N., Leonard, G.S., Power, W.L. Scenario-based modelling of waves generated by sublacustrine explosive eruptions at Lake Taupō, New Zealand (2023) Natural Hazards and Earth System Sciences, 23 (2), pp. 955-971. 
DOI: 10.5194/nhess-23-955-2023

 

Rickard, G.J., Behrens, E., Bahamondes Dominguez, A.A., Pinkerton, M.H. An Assessment of the Oceanic Physical and Biogeochemical Components of CMIP5 and CMIP6 Models for the Ross Sea Region (2023) Journal of Geophysical Research: Oceans, 128 (3), art. no. e2022JC018880. 
DOI: 10.1029/2022JC018880

 

Toombs-Ruane, L.J., Marshall, J.C., Benschop, J., Drinković, D., Midwinter, A.C., Biggs, P.J., Grange, Z., Baker, M.G., Douwes, J., Roberts, M.G., French, N.P., Burgess, S.A. Extended-spectrum β-lactamase- and AmpC β-lactamase-producing Enterobacterales associated with urinary tract infections in the New Zealand community: a case-control study (2023) International Journal of Infectious Diseases, 128, pp. 325-334. 
DOI: 10.1016/j.ijid.2022.12.013

 

Kamalzadeh, A., Pender, M.J. Dilatancy Effects on Surface Foundations on Dry Sand (2023) International Journal of Geomechanics, 23 (3), art. no. 04022302. 
DOI: 10.1061/IJGNAI.GMENG-7826

 

Westberry, B.P., Mansel, B.W., Lundin, L., Williams, M.A.K. Molecular dynamics simulations and X-ray scattering show the κ-carrageenan disorder-to-order transition to be the formation of double-helices (2023) Carbohydrate Polymers, 302, art. no. 120417. 
DOI: 10.1016/j.carbpol.2022.120417

 

Chaudhuri, K., Pletzer, A., Waqanivavalagi, S.W.F.R., Milsom, P., Smith, N.P. Personalized surgical planning for coronary bypass graft configurations using patient-specific computational modeling to avoid flow competition in arterial grafts (2023) Frontiers in Cardiovascular Medicine, 10, art. no. 1095678. 
DOI: 10.3389/fcvm.2023.1095678

 

Carpenter, J.K., Monks, A., Innes, J., Griffiths, J., Anderson, D. Immigration drives ship rat population irruptions in marginal high-elevation habitat in response to pulsed resources (2023) Ecosphere, 14 (2), art. no. e4424. 
DOI: 10.1002/ecs2.4424

 

Behrens, E., Bostock, H. The Response of the Subtropical Front to Changes in the Southern Hemisphere Westerly Winds—Evidence From Models and Observations (2023) Journal of Geophysical Research: Oceans, 128 (2), art. no. e2022JC019139. 
DOI: 10.1029/2022JC019139

 

Bai, Y., Jiao, W., Vörster, J., Parker, E.J. Conformational interdomain flexibility in a bacterial α-isopropylmalate synthase is necessary for leucine biosynthesis (2023) Journal of Biological Chemistry, 299 (2), art. no. 102789. 
DOI: 10.1016/j.jbc.2022.102789

 

Peng, W., Wang, Z., Lu, R., Li, Q., Wang, Z., Zhao, Y., Xu, L., Mai, L. Artificial heterointerfaces of defect-rich Ni and amorphous/crystalline MoN enable efficient hydrogen evolution reaction (2023) Chemical Engineering Journal, 457, art. no. 141173. 
DOI: 10.1016/j.cej.2022.141173

 

Kamalzadeh, A., Pender, M.J. Dynamic response of Mechanically Stabilised Earth (MSE) structures: A numerical study (2023) Geotextiles and Geomembranes, 51 (1), pp. 73-87. 
DOI: 10.1016/j.geotexmem.2022.09.008

 

Go, S.T., Kingan, M.J., McKay, R.S., Sharma, R.N. Turbulent inflow noise produced by a shrouded propeller (2023) Journal of Sound and Vibration, 542, art. no. 117366. 
DOI: 10.1016/j.jsv.2022.117366

 

Hosseini, S., Avci, R., Paskaranandavadivel, N., Suresh, V., Cheng, L.K. Quantification of the Regional Properties of Gastric Motility Using Dynamic Magnetic Resonance Images (2023) IEEE Open Journal of Engineering in Medicine and Biology, 4, pp. 38-44. 
DOI: 10.1109/OJEMB.2023.3261224

 

Underwood, A.P.C., Groszek, A.J., Yu, X., Blakie, P.B., Williamson, L.A. Berezinskii-Kosterlitz-Thouless transitions in an easy-plane ferromagnetic superfluid (2023) Physical Review Research, 5 (1), art. no. L012045. 
DOI: 10.1103/PhysRevResearch.5.L012045

 

Wold, J.R., Guhlin, J.G., Dearden, P.K., Santure, A.W., Steeves, T.E. The promise and challenges of characterizing genome-wide structural variants: A case study in a critically endangered parrot (2023) Molecular Ecology Resources. 
DOI: 10.1111/1755-0998.13783

 

Rammelmüller, L., Huber, D., Čufar, M., Brand, J., Hammer, H.-W., Volosniev, A.G. Magnetic impurity in a one-dimensional few-fermion system (2023) SciPost Physics, 14 (1), art. no. 006. 
DOI: 10.21468/SciPostPhys.14.1.006

 

Krishnan, M., Phipps-Green, A., Russell, E.M., Major, T.J., Cadzow, M., Stamp, L.K., Dalbeth, N., Hindmarsh, J.H., Qasim, M., Watson, H., Liu, S., Carlson, J.C., Minster, R.L., Hawley, N.L., Naseri, T., Reupena, M.S., Deka, R., McGarvey, S.T., Merriman, T.R., Murphy, R., Weeks, D.E. Association of rs9939609 in FTO with BMI among Polynesian peoples living in Aotearoa New Zealand and other Pacific nations (2023) Journal of Human Genetics. 
DOI: 10.1038/s10038-023-01141-5

 

Xia, C., Chen, Y., Zhang, H., Zhang, H., Dai, F., Wu, J. Efficient Neural Network Accelerators with Optical Computing and Communication (2023) Computer Science and Information Systems, 29 (1), pp. 513-535. 
DOI: 10.2298/CSIS220131066X

 

Trang, N.H., Nguyen, D.T.B., Ha, H.T. Vocabulary Demands of Academic Spoken English Revisited: A Case of University Lectures and TED Presentations (2023) SAGE Open, 13 (1). 
DOI: 10.1177/21582440231155334

 

West, A.G., Digby, A., Taylor, M.W., Kakapo Recovery Team, Kakapo Aspergillosis Research Consortium The mycobiota of faeces from the critically endangered kākāpō and associated nest litter (2023) New Zealand Journal of Zoology. 
DOI: 10.1080/03014223.2023.2170428

 

Robinson, J.A., Holland, D.J., Fullard, L. Complex behavior in compressible nonisochoric granular flows (2023) Physical Review Fluids, 8 (1), art. no. 014304. 
DOI: 10.1103/PhysRevFluids.8.014304

 

Palmada, N., Cater, J.E., Cheng, L.K., Suresh, V. Anatomically realistic computational model of flow and mixing in the human duodenum (2023) Physics of Fluids, 35 (1), art. no. 011907. 
DOI: 10.1063/5.0135070

 

Ghodla, S., Eldridge, J.J., Stanway, E.R., Stevance, H.F. Evaluating chemically homogeneous evolution in stellar binaries: Electromagnetic implications - Ionizing photons, SLSN-I, GRB, Ic-BL (2023) Monthly Notices of the Royal Astronomical Society, 518 (1), pp. 860-877. 
DOI: 10.1093/mnras/stac3177