Genomics Data Carpentry
On 1 July 2025, the roles, services and technologies of New Zealand eScience Infrastructure (NeSI) were integrated into the crown-owned company, Research and Education Advanced Network New Zealand (REANNZ). Stay connected with us by visiting the REANNZ website.
Genomics Aotearoa and NeSI will be running this beginners workshop focusing on a DNA variant calling workflow.
Online
21-22 September 2021
10:00 am - 4:00 pm
The following topics will be covered:
- Project organization and management
Learn how to structure your metadata, organize and document your genomics data and bioinformatics workflow, and access data on the NCBI sequence read archive (SRA) database.
- Introduction to the command line
Learn to navigate your file system, create, copy, move, and remove files and directories, and automate repetitive tasks using scripts and wildcards.
- Data wrangling and processing
Use command-line tools to perform quality control, align reads to a reference genome, and identify and visualize between-sample variation.
- Introduction to cloud computing for genomics
Learn how to work with HPCs and and how to transfer data between your local computer and HPCs/cloud resources.
Registration:
To attend, you must register in advance. Instructions for connecting to the online session will be emailed to all registrants.
Event Date:
Tuesday, September 21, 2021 - 10:00 to Wednesday, September 22, 2021 - 16:00
Topic:
