Genomics Data Carpentry
Genomics Aotearoa and NeSI will be running this beginners workshop focusing on a DNA variant calling workflow.
21-22 September 2021
10:00 am - 4:00 pm
The following topics will be covered:
- Project organization and management
Learn how to structure your metadata, organize and document your genomics data and bioinformatics workflow, and access data on the NCBI sequence read archive (SRA) database.
- Introduction to the command line
Learn to navigate your file system, create, copy, move, and remove files and directories, and automate repetitive tasks using scripts and wildcards.
- Data wrangling and processing
Use command-line tools to perform quality control, align reads to a reference genome, and identify and visualize between-sample variation.
- Introduction to cloud computing for genomics
Learn how to work with HPCs and and how to transfer data between your local computer and HPCs/cloud resources.
To attend, you must register in advance. Instructions for connecting to the online session will be emailed to all registrants.